Wholesome Pumpkin Muffins Recipe
Introduction
Wholesome Pumpkin Muffins are a delicious, nutrient-packed treat perfect for breakfast or a healthy snack. Filled with fruits, seeds, and warm spices, these muffins offer a satisfying texture and natural sweetness that everyone will love.

Ingredients
- 2 cups multigrain flour
- 3/4 cup granulated sugar
- 1 tbsp ground cinnamon
- 2 tsp baking powder
- 1/2 tsp salt
- 1/2 cup sweetened shredded coconut
- 1/2 cup raisins, dried cranberries, and/or dried blueberries (or 1 1/2 to 2 cups mixed dried fruit such as figs or apricots)
- 2 cups grated carrot
- 1 shredded apple
- 1 can (8 oz) crushed pineapple, well drained
- 1/2 cup hulled sunflower seeds
- 1/2 cup pepitas (pumpkin seeds)
- 1/4 cup chia seeds
- 1/4 cup hemp hearts
- 3 large eggs
- 2/3 cup vegetable or olive oil
- 1 tsp vanilla extract
Instructions
- Step 1: In a large mixing bowl, combine the multigrain flour, granulated sugar, ground cinnamon, baking powder, and salt. Whisk or stir until evenly distributed to form the base of your muffin batter.
- Step 2: Add the shredded coconut, dried fruits, grated carrot, shredded apple, well-drained crushed pineapple, sunflower seeds, pepitas, chia seeds, and hemp hearts to the dry mixture. Stir well until all fruits, seeds, and vegetables are evenly coated.
- Step 3: In a separate bowl, whisk together the eggs, vegetable or olive oil, and vanilla extract until smooth. This wet mixture will help bind the ingredients together.
- Step 4: Pour the wet mixture into the bowl with the dry ingredients and fruit/seed mixture. Stir gently but thoroughly until fully combined. The batter will be thick, which is normal.
- Step 5: Spoon the batter into 12 lined or greased muffin cups, filling each one heaping full. Alternatively, use 16 cups for regular-sized muffins. For extra crunch, sprinkle a few pepitas on top before baking.
- Step 6: Bake at 350°F (175°C) for 30-35 minutes, or until the tops are browned and crusty. Let muffins cool slightly before serving.
Tips & Variations
- Use olive oil for a subtle flavor or vegetable oil for a neutral taste.
- Swap out dried fruit combinations to suit your preference or seasonal availability.
- For a nut-free version, omit seeds or replace with chopped nuts if preferred.
- Adding a handful of chopped nuts like walnuts or pecans will add extra texture and flavor.
Storage
Store muffins in an airtight container at room temperature for up to 3 days. For longer storage, freeze the muffins individually wrapped for up to 3 months. Reheat in the microwave for 20-30 seconds or warm in a low oven before serving.
How to Serve

Serve this delicious recipe with your favorite sides.
FAQs
Can I use all-purpose flour instead of multigrain flour?
Yes, you can use all-purpose flour, but using multigrain flour adds extra nutrients and texture that enhance the wholesome quality of the muffins.
Can I make these muffins vegan?
To make the recipe vegan, substitute the eggs with flax eggs (1 tbsp ground flaxseed mixed with 3 tbsp water per egg, set for 5 minutes) and use a plant-based oil. Keep in mind the texture may vary slightly.
PrintWholesome Pumpkin Muffins Recipe
These Wholesome Pumpkin Muffins are a nutritious and flavorful treat packed with multigrain flour, a medley of dried fruits, fresh grated carrot and apple, crunchy seeds, and warm cinnamon spice. Moist and wholesome, they are perfect for a healthy breakfast or snack.
- Prep Time: 20 minutes
- Cook Time: 30-35 minutes
- Total Time: 50-55 minutes
- Yield: 12 large muffins or 16 regular muffins 1x
- Category: Baked Goods
- Method: Baking
- Cuisine: American
- Diet: Vegetarian
Ingredients
Dry Ingredients
- 2 cups multigrain flour
- 3/4 cup granulated sugar
- 1 tbsp ground cinnamon
- 2 tsp baking powder
- 1/2 tsp salt
Fruit, Seeds, and Extras
- 1/2 cup sweetened shredded coconut
- 1/2 cup raisins, dried cranberries, and/or dried blueberries (or 1 1/2 to 2 cups mixed dried fruit such as figs or apricots)
- 2 cups grated carrot
- 1 shredded apple
- 1 can (8 oz) crushed pineapple, well drained
- 1/2 cup hulled sunflower seeds
- 1/2 cup pepitas (pumpkin seeds)
- 1/4 cup chia seeds
- 1/4 cup hemp hearts
Wet Ingredients
- 3 large eggs
- 2/3 cup vegetable oil or olive oil
- 1 tsp vanilla extract
Instructions
- Combine Dry Ingredients: In a large mixing bowl, combine 2 cups multigrain flour, 3/4 cup granulated sugar, 1 tbsp ground cinnamon, 2 tsp baking powder, and 1/2 tsp salt. Whisk or stir until evenly distributed to create the muffin batter base.
- Incorporate Fruits, Vegetables, Coconut, and Seeds: Add 1/2 cup sweetened shredded coconut, 1/2 cup raisins/dried cranberries/blueberries (or 1 1/2 to 2 cups mixed dried fruit), 2 cups grated carrot, 1 shredded apple, 8 oz well-drained crushed pineapple, 1/2 cup hulled sunflower seeds, 1/2 cup pepitas, 1/4 cup chia seeds, and 1/4 cup hemp hearts to the dry mixture. Stir thoroughly until all fruits, seeds, and veggies are evenly coated with the flour blend.
- Mix Wet Ingredients: In a separate medium bowl, whisk together 3 large eggs, 2/3 cup vegetable or olive oil, and 1 tsp vanilla extract until smooth and well combined. This wet mixture will bind the dry ingredients.
- Combine Wet and Dry Mixtures: Pour the wet mixture into the bowl with the dry and fruit/seed mixture. Stir gently but thoroughly until fully incorporated. The batter will be thick; this is expected.
- Fill Muffin Cups and Bake: Spoon the thick batter into 12 lined or greased muffin cups, filling each heaping full, or use 16 cups for regular-sized muffins. Optionally, sprinkle pepitas on top for extra crunch. Bake in a preheated oven at 350°F (175°C) for 30-35 minutes until tops are browned and crusty. Allow muffins to cool slightly before serving.
Notes
- The batter will be very thick; do not worry as this is normal for these muffins.
- You can use either olive oil for subtle flavor or vegetable oil as a neutral option.
- Sprinkling pepitas on top before baking adds a nice crunchy texture.
- The muffins keep well for several days refrigerated and can be frozen for longer storage.
- Ensure the crushed pineapple is well drained to avoid excess moisture in the batter.
Keywords: Pumpkin Muffins, Healthy Muffins, Multigrain Muffins, Fall Recipes, Seed and Fruit Muffins, Baked Treats, Vegetarian Muffins

